P1/P2

968f/U1402r

(a)

OL-KR40/385m

OL-KR49/532m

OL-KR40/609m

ONK-PVA3/83m

OL-KR43/96m

OL-KR42/175m

Target

Taxa

HTP

DGGE

HTP

DGGE

HTP

DGGE

Cloning

DGGE

Cloning

DGGE

Cloning

DGGE

Bacteria

α-proteobacteria

1.90

0.80

1

4.55

1.11

β-proteobacteria

1.70

1

68.00

3

40.90

5

15.38

3.33

15.38

γ-proteobacteria

83.40

5

11.00

2

23.50

1

38.46

1

21.11

38.46

2

δ-proteobacteria

0.30

2

0.90

23.08

41.11

23.08

ε-proteobacteria

2.70

0.70

1.54

1.11

1

1.54

Clostridia

0.20

20.20

0.80

lowg+cFirmicutes

1.00

0.40

1

1.50

1

22.73

15.56

1

7.69

Bacilli

1

Tenericutes

0.40

4.00

Erysipelotrichi

0.04

0.30

Bacteroidetes -Flavobacteria

0.80

1

26.00

1

12.50

4.44

1.54

Chlamydiae

0.30

0.20

1.14

1.11

6.15

Spirochaete

0.03

0.40

Candidate Division OD1

1

Actinomycetes

2.27

1.54

Verrucomicrobia

2.22

Chloroflexi

1.14

1.11

Chlorobi

4.55

2.22

Nitrospirae

9.09

Candidate Division OP3

4.55

2.22

1.54

Candidate Division OD1

6.82

1.54

Candidate Division OP11

2.27

1.11

Candidate Division TM7

2.22

1.54

Archaea

0.03

0.02

A344F/A519RP

(b)

OL-KR40/385m

OL-KR49/532m

OL-KR40/609m

Target

HTP

DGGE

HTP

DGGE

HTP

DGGE

Archaea

Uncultured Thermoplasmatales

52.20

1

81.40

58.10

1

Cultured Thermoplasmatales

13.70

Pendant 33/DHVE3, 4, 6

7.30

47.30

1

Methanosarcinales

10.00

3

0.20

1

SAGMEG/SAGMA1

1

6.90

2

19.00

1

Methanobacterium

0.20

MEG

1.50

Crenarchaeota group C3

1.90